Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| sdr family oxidoreductase | IZT61_16315 | P25145 | + | 4016470 - 4017207 | 26363.1 |
| arac family transcriptional regulator | IZT61_16320 | B5F0M9 | + | 4017226 - 4018140 | 34978.9 |
| response regulator transcription factor | IZT61_16325 | P54662 | + | 4018208 - 4018633 | 16182.5 |
| hypothetical protein | IZT61_16330 | Not Available | + | 4019239 - 4019496 | 9879.91 |
| hypothetical protein | IZT61_16335 | A0A4R2UGS4 | - | 4019610 - 4020176 | 21626.6 |
| adenylate/guanylate cyclase domain-containing protein | IZT61_16340 | A0A0J5ZXG5 | - | 4020189 - 4021184 | 37014.4 |
| adenylate/guanylate cyclase domain-containing protein | IZT61_16345 | P40137 | - | 4021186 - 4021953 | 29226.9 |
| hypothetical protein | IZT61_16350 | Q55F68 | - | 4021953 - 4022720 | 29148.0 |
| hypothetical protein | IZT61_16355 | Not Available | + | 4022918 - 4024654 | 67421.7 |
| hypothetical protein | IZT61_16360 | Not Available | + | 4024815 - 4027094 | 86806.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.