Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| arac family transcriptional regulator | IZT61_16265 | P55922 | - | 4005662 - 4006582 | 35400.6 |
| alkene reductase | IZT61_16270 | Q69TI0 | - | 4007182 - 4008264 | 39668.1 |
| sdr family nad(p)-dependent oxidoreductase | IZT61_16275 | Q8KU07 | - | 4008408 - 4009304 | 32658.3 |
| sdr family nad(p)-dependent oxidoreductase | IZT61_16280 | Q12177 | - | 4009411 - 4010049 | 23430.9 |
| pirin family protein | IZT61_16285 | Q9XBR7 | - | 4010156 - 4010905 | 28275.8 |
| nad(p)-dependent alcohol dehydrogenase | IZT61_16290 | Q9SV68 | - | 4010972 - 4011913 | 33935.3 |
| crp/fnr family transcriptional regulator | IZT61_16295 | Not Available | + | 4012087 - 4012644 | 21645.2 |
| sdr family oxidoreductase | IZT61_16300 | Q8A945 | + | 4012721 - 4013533 | 29622.3 |
| helix-turn-helix transcriptional regulator | IZT61_16305 | Q51872 | - | 4013619 - 4014356 | 28308.9 |
| dmt family transporter | IZT61_16310 | Not Available | - | 4014625 - 4016221 | 58947.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.