Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ai-2e family transporter | IZT61_16215 | O34472 | - | 3993196 - 3994260 | 38877.8 |
| glycoside hydrolase family 15 protein | IZT61_16220 | Q10211 | - | 3994280 - 3996118 | 70194.2 |
| mechanosensitive ion channel | IZT61_16225 | T0DVE4 | - | 3996134 - 3997036 | 34128.1 |
| apc family permease | IZT61_16230 | P96589 | - | 3997056 - 3998804 | 64512.5 |
| l,d-transpeptidase family protein | IZT61_16235 | P22525 | + | 3998985 - 4000577 | 61429.6 |
| sodium:proton antiporter | IZT61_16240 | G3XD29 | + | 4000668 - 4001897 | 44638.6 |
| crp/fnr family transcriptional regulator | IZT61_16245 | Q5SID7 | + | 4002271 - 4002834 | 21628.3 |
| alpha/beta hydrolase | IZT61_16250 | O52866 | + | 4002913 - 4003842 | 34798.5 |
| nmra family nad(p)-binding protein | IZT61_16255 | Q4R0H9 | + | 4003853 - 4004749 | 33018.2 |
| voc family protein | IZT61_16260 | Not Available | - | 4005183 - 4005560 | 14601.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.