Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IZT61_16065 | Not Available | - | 3962161 - 3962325 | 6159.86 |
| padr family transcriptional regulator | IZT61_16070 | C0H3Y4 | + | 3962888 - 3963223 | 12373.9 |
| pspc domain-containing protein | IZT61_16075 | Not Available | + | 3963238 - 3964977 | 65875.0 |
| tonb-dependent receptor | IZT61_16080 | Not Available | + | 3965067 - 3967514 | 90714.1 |
| hypothetical protein | IZT61_16085 | Not Available | + | 3967686 - 3968051 | 13749.6 |
| Trna-lys | Not Available | Not Available | + | 3968164 - 3968236 | Not Available |
| site-specific integrase | IZT61_16095 | Q71Y59 | + | 3968484 - 3969704 | 46549.7 |
| response regulator transcription factor | IZT61_16100 | Q5HLK6 | - | 3970946 - 3971602 | 24573.5 |
| response regulator | IZT61_16105 | Q55890 | + | 3971982 - 3972338 | 13291.5 |
| hypothetical protein | IZT61_16110 | Not Available | + | 3972340 - 3972819 | 17362.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.