Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IZT61_16015 | Not Available | + | 3952725 - 3952925 | 7373.65 |
| isoleucyl-trna synthetase | IZT61_16020 | Not Available | + | 3952909 - 3953181 | 10097.5 |
| mmpl family transporter | IZT61_16025 | Q58957 | - | 3953375 - 3955525 | 79735.4 |
| dna repair protein reco | IZT61_16030 | B6YQ41 | + | 3955850 - 3956575 | 27898.1 |
| Trna-val | Not Available | Not Available | + | 3956795 - 3956869 | Not Available |
| Trna-val | Not Available | Not Available | + | 3956917 - 3956991 | Not Available |
| giy-yig nuclease family protein | IZT61_16045 | Q5HRR7 | + | 3959077 - 3959328 | 10055.1 |
| hypothetical protein | IZT61_16050 | Not Available | + | 3959471 - 3960382 | 35218.3 |
| class i sam-dependent methyltransferase | IZT61_16055 | B9LZA9 | + | 3960554 - 3961186 | 24454.9 |
| nad(p)/fad-dependent oxidoreductase | IZT61_16060 | Q2UPB5 | + | 3961252 - 3962151 | 32548.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.