Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| fkbp-type peptidyl-prolyl cis-trans isomerase | IZT61_15965 | Q09734 | + | 3935810 - 3936721 | 33153.4 |
| deoxyribodipyrimidine photo-lyase | IZT61_15970 | Q55081 | - | 3936714 - 3938012 | 51251.3 |
| tigr01777 family protein | IZT61_15975 | P77775 | - | 3938104 - 3939006 | 33052.9 |
| dash family cryptochrome | IZT61_15980 | Q7NMD1 | + | 3941088 - 3942362 | 48302.9 |
| 2-oxoglutarate dehydrogenase e1 component | IZT61_15985 | Q59106 | + | 3942685 - 3945483 | 105181.0 |
| 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase | IZT61_15990 | P0AFG7 | + | 3945716 - 3946951 | 43405.4 |
| duf2809 domain-containing protein | IZT61_15995 | Not Available | + | 3947033 - 3947395 | 13986.6 |
| lipoprotein signal peptidase | IZT61_16000 | B2RI39 | - | 3948225 - 3948827 | 22766.0 |
| trar/dksa family transcriptional regulator | IZT61_16005 | P0CAU3 | - | 3948827 - 3949210 | 14374.0 |
| isoleucine--trna ligase | IZT61_16010 | Q11NV4 | - | 3949241 - 3952642 | 128700.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.