Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| m61 family metallopeptidase | IZT61_15915 | Not Available | + | 3918890 - 3920722 | 67364.5 |
| hypothetical protein | IZT61_15920 | Not Available | - | 3921653 - 3922117 | 16422.7 |
| long-chain fatty acid--coa ligase | IZT61_15925 | P44446 | + | 3922379 - 3924154 | 66144.1 |
| gamma-glutamyltransferase | IZT61_15930 | P18956 | + | 3924126 - 3925844 | 61584.7 |
| ompa family protein | IZT61_15935 | P22263 | + | 3925942 - 3927255 | 46684.3 |
| marr family transcriptional regulator | IZT61_15940 | O33817 | + | 3928558 - 3928992 | 16570.0 |
| enoyl-coa hydratase/isomerase family protein | IZT61_15945 | O32178 | + | 3929195 - 3931600 | 88999.5 |
| acetyl-coa c-acyltransferase | IZT61_15950 | O32177 | + | 3931827 - 3933002 | 41698.5 |
| acyl-coa dehydrogenase family protein | IZT61_15955 | O32176 | + | 3933351 - 3935144 | 65708.0 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | IZT61_15960 | Q8K943 | + | 3935321 - 3935806 | 17499.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.