Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| l-fucose isomerase | IZT61_15865 | Q64ZS4 | + | 3902283 - 3904070 | 65688.1 |
| carbohydrate kinase | IZT61_15870 | Q9KCM0 | + | 3904101 - 3905417 | 50005.8 |
| rna polymerase sigma-70 factor | IZT61_15875 | O05409 | + | 3905874 - 3906482 | 23797.9 |
| fecr family protein | IZT61_15880 | Not Available | + | 3906970 - 3908121 | 43599.1 |
| tonb-dependent receptor | IZT61_15885 | T2KPJ3 | + | 3908219 - 3911662 | 125803.0 |
| ragb/susd family nutrient uptake outer membrane protein | IZT61_15890 | T2KNB8 | + | 3911669 - 3913090 | 52267.9 |
| fibronectin type iii domain-containing protein | IZT61_15895 | Not Available | + | 3913077 - 3914024 | 34835.9 |
| endonuclease/exonuclease/phosphatase family protein | IZT61_15900 | Not Available | + | 3914252 - 3915115 | 31116.5 |
| mbl fold metallo-hydrolase | IZT61_15905 | Not Available | + | 3915241 - 3916560 | 49541.6 |
| alkaline phosphatase family protein | IZT61_15910 | Q47910 | + | 3916626 - 3918266 | 61915.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.