Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| molecular chaperone htpg | IZT61_15815 | Q8A9B8 | - | 3887250 - 3889130 | 70841.4 |
| response regulator | IZT61_15820 | Q31S42 | - | 3889765 - 3890154 | 14731.0 |
| n-acetylglucosamine kinase | IZT61_15825 | Not Available | - | 3890264 - 3891085 | 30667.6 |
| tolc family protein | IZT61_15830 | J7RET5 | - | 3891144 - 3892454 | 48127.4 |
| efflux rnd transporter permease subunit | IZT61_15835 | Q57124 | - | 3892456 - 3895566 | 114206.0 |
| efflux rnd transporter periplasmic adaptor subunit | IZT61_15840 | C9XVZ5 | - | 3895569 - 3896663 | 38300.3 |
| l-fucose:h+ symporter permease | IZT61_15845 | P44776 | - | 3897132 - 3898424 | 47069.0 |
| aldehyde dehydrogenase | IZT61_15850 | P25553 | - | 3898589 - 3900028 | 52219.8 |
| helix-turn-helix transcriptional regulator | IZT61_15855 | P54722 | - | 3900450 - 3901349 | 35113.4 |
| rhamnulose-1-phosphate aldolase | IZT61_15860 | Q8A1A0 | + | 3901459 - 3902262 | 29913.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.