Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| thiopeptide-type bacteriocin biosynthesis protein | IZT61_15765 | P39774 | + | 3879428 - 3882226 | 106818.0 |
| sensor histidine kinase | IZT61_15770 | Q8EQQ2 | - | 3882223 - 3883338 | 42883.8 |
| hypothetical protein | IZT61_15775 | Not Available | + | 3883479 - 3883616 | 5007.03 |
| hypothetical protein | IZT61_15780 | Not Available | + | 3883795 - 3883932 | 5007.03 |
| hypothetical protein | IZT61_15785 | Not Available | + | 3883953 - 3884090 | 5007.03 |
| hypothetical protein | IZT61_15790 | Not Available | + | 3884107 - 3884244 | 5007.03 |
| hypothetical protein | IZT61_15795 | Not Available | + | 3884265 - 3884402 | 4979.03 |
| response regulator transcription factor | IZT61_15800 | Q8EQQ3 | - | 3884857 - 3885600 | 27984.8 |
| hypothetical protein | IZT61_15805 | Not Available | + | 3885958 - 3886329 | 14148.0 |
| type i restriction enzyme hsdr n-terminal domain-containing protein | IZT61_15810 | Not Available | + | 3886350 - 3886844 | 19007.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.