Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| duf2461 domain-containing protein | IZT61_15715 | Not Available | + | 3852870 - 3853529 | 25079.2 |
| flagellar motor protein motb | IZT61_15720 | P28612 | + | 3853714 - 3854553 | 31237.7 |
| hypothetical protein | IZT61_15725 | Not Available | - | 3854603 - 3857194 | 100803.0 |
| putative ig domain-containing protein | IZT61_15730 | Q6GDE9 | + | 3857425 - 3870150 | 428297.0 |
| porp/sprf family type ix secretion system membrane protein | IZT61_15735 | Not Available | + | 3870187 - 3871188 | 36234.2 |
| ompa family protein | IZT61_15740 | Q7NFT5 | + | 3871197 - 3873200 | 74792.3 |
| hypothetical protein | IZT61_15745 | Not Available | + | 3874104 - 3874583 | 17315.7 |
| hypothetical protein | IZT61_15750 | Not Available | + | 3875455 - 3877257 | 66609.5 |
| hypothetical protein | IZT61_15755 | Not Available | + | 3877269 - 3878033 | 30186.4 |
| hypothetical protein | IZT61_15760 | Not Available | + | 3878173 - 3878937 | 29947.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.