Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| duf4302 domain-containing protein | IZT61_15665 | Not Available | + | 3840071 - 3841414 | 48856.6 |
| hypothetical protein | IZT61_15670 | Not Available | - | 3841433 - 3841585 | 5791.11 |
| rna polymerase sigma-70 factor | IZT61_15675 | O05404 | + | 3842170 - 3842766 | 23322.4 |
| fecr domain-containing protein | IZT61_15680 | P23485 | + | 3842874 - 3843836 | 36080.1 |
| susc/raga family tonb-linked outer membrane protein | IZT61_15685 | T2KM18 | + | 3843874 - 3847515 | 135082.0 |
| ragb/susd family nutrient uptake outer membrane protein | IZT61_15690 | Not Available | + | 3847533 - 3849011 | 54739.4 |
| hypothetical protein | IZT61_15695 | Not Available | + | 3849029 - 3850462 | 53199.1 |
| duf4302 domain-containing protein | IZT61_15700 | Not Available | + | 3850481 - 3851746 | 46529.0 |
| hypothetical protein | IZT61_15705 | Not Available | + | 3852038 - 3852310 | 10029.6 |
| duf983 domain-containing protein | IZT61_15710 | Not Available | + | 3852313 - 3852708 | 15270.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.