Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| heme-copper oxidase subunit iii | IZT61_15615 | Q04442 | + | 3828192 - 3828758 | 20984.3 |
| cytochrome c oxidase subunit 3 | IZT61_15620 | P0ABJ4 | + | 3828790 - 3829497 | 26806.8 |
| cytochrome c oxidase subunit iv family protein | IZT61_15625 | Not Available | + | 3829523 - 3829876 | 13417.9 |
| redoxin domain-containing protein | IZT61_15630 | Not Available | + | 3829876 - 3830571 | 26558.4 |
| duf420 domain-containing protein | IZT61_15635 | O31845 | + | 3830672 - 3831214 | 20589.0 |
| rna polymerase sigma-70 factor | IZT61_15640 | P44790 | + | 3831414 - 3832013 | 22944.8 |
| fecr domain-containing protein | IZT61_15645 | Not Available | + | 3832075 - 3833241 | 43470.7 |
| susc/raga family tonb-linked outer membrane protein | IZT61_15650 | T2KMI3 | + | 3833584 - 3837213 | 134077.0 |
| ragb/susd family nutrient uptake outer membrane protein | IZT61_15655 | Not Available | + | 3837225 - 3838688 | 54475.6 |
| hypothetical protein | IZT61_15660 | Not Available | + | 3838695 - 3840059 | 50111.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.