Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| c-type cytochrome | IZT61_15565 | P0DOV3 | + | 3814673 - 3815968 | 47700.9 |
| tat-variant-translocated molybdopterin oxidoreductase | IZT61_15570 | Q72E85 | + | 3816018 - 3819047 | 110817.0 |
| polysulfide reductase nrfd | IZT61_15575 | Q9HR72 | + | 3819074 - 3820546 | 55898.5 |
| duf3341 domain-containing protein | IZT61_15580 | Not Available | + | 3820549 - 3821085 | 19924.2 |
| c-type cytochrome | IZT61_15585 | Not Available | + | 3821057 - 3821674 | 22253.3 |
| quinol:cytochrome c oxidoreductase | IZT61_15590 | Not Available | + | 3821689 - 3822909 | 46128.6 |
| cytochrome c oxidase subunit ii | IZT61_15595 | P98053 | + | 3822983 - 3824212 | 45920.9 |
| cbb3-type cytochrome c oxidase subunit i | IZT61_15600 | P98000 | + | 3824237 - 3826117 | 70262.7 |
| cox15/ctaa family protein | IZT61_15605 | Q5WFD1 | + | 3826199 - 3827257 | 39672.5 |
| protoheme ix farnesyltransferase | IZT61_15610 | Q11SZ7 | + | 3827268 - 3828176 | 33676.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.