Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | IZT61_15515 | T2KPJ3 | + | 3800478 - 3803897 | 124750.0 |
| ragb/susd family nutrient uptake outer membrane protein | IZT61_15520 | T2KNB8 | + | 3803908 - 3805416 | 55095.4 |
| pkd domain-containing protein | IZT61_15525 | Not Available | + | 3805429 - 3806832 | 50752.6 |
| glycoside hydrolase family 16 protein | IZT61_15530 | P45798 | + | 3807076 - 3807897 | 30838.2 |
| duf4369 domain-containing protein | IZT61_15535 | Not Available | + | 3808924 - 3809649 | 27232.1 |
| hypothetical protein | IZT61_15540 | P21163 | + | 3809664 - 3810716 | 38821.2 |
| nucleotidyltransferase domain-containing protein | IZT61_15545 | Q57877 | + | 3811114 - 3811407 | 11327.5 |
| duf86 domain-containing protein | IZT61_15550 | Q8TR85 | + | 3811397 - 3811750 | 13487.2 |
| polymerase | IZT61_15555 | Not Available | - | 3812043 - 3813161 | 42231.2 |
| deoxyhypusine synthase family protein | IZT61_15560 | O28088 | + | 3813439 - 3814419 | 37084.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.