Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| osmc family protein | IZT61_15465 | Not Available | + | 3790556 - 3791032 | 17534.5 |
| m1 family metallopeptidase | IZT61_15470 | Q48656 | - | 3791303 - 3793183 | 70832.0 |
| transcription elongation factor grea | IZT61_15475 | A5FJJ8 | + | 3793469 - 3793942 | 17154.6 |
| hit family protein | IZT61_15480 | P0A5B6 | + | 3794120 - 3794518 | 14756.1 |
| hypothetical protein | IZT61_15485 | Not Available | + | 3795142 - 3795294 | 6048.24 |
| pirin family protein | IZT61_15490 | P58114 | - | 3795403 - 3796293 | 33725.5 |
| nadh:flavin oxidoreductase | IZT61_15495 | Q6Z965 | - | 3796469 - 3797569 | 40095.2 |
| helix-turn-helix transcriptional regulator | IZT61_15500 | C0H3S9 | - | 3797582 - 3797884 | 11314.5 |
| rna polymerase sigma-70 factor | IZT61_15505 | Q45585 | + | 3798057 - 3798635 | 22769.8 |
| fecr family protein | IZT61_15510 | Not Available | + | 3799160 - 3800329 | 43236.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.