Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | IZT61_15415 | Not Available | - | 3780182 - 3780982 | 30062.7 |
| atp-binding cassette domain-containing protein | IZT61_15420 | P42332 | - | 3780985 - 3781893 | 32882.3 |
| hypothetical protein | IZT61_15425 | Not Available | - | 3781896 - 3782066 | 6193.87 |
| sensor histidine kinase | IZT61_15430 | Q2FK46 | + | 3782311 - 3783342 | 39800.1 |
| response regulator transcription factor | IZT61_15435 | Q8ZBV2 | + | 3783486 - 3784235 | 28517.8 |
| 1-acyl-sn-glycerol-3-phosphate acyltransferase | IZT61_15440 | Q8GXU8 | - | 3784472 - 3785209 | 27892.4 |
| hypothetical protein | IZT61_15445 | Not Available | - | 3785283 - 3785921 | 24597.4 |
| nudix hydrolase | IZT61_15450 | I6X235 | - | 3785965 - 3786519 | 20801.9 |
| tonb-dependent receptor | IZT61_15455 | O52903 | - | 3786762 - 3789251 | 92002.9 |
| 2-hydroxyacid dehydrogenase | IZT61_15460 | O27051 | + | 3789512 - 3790438 | 34445.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.