Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| sam-dependent methyltransferase | IZT61_15365 | P37544 | - | 3771433 - 3772134 | 26298.6 |
| hypothetical protein | IZT61_15370 | Not Available | + | 3772405 - 3774105 | 66444.5 |
| had family hydrolase | IZT61_15375 | Q8DPQ3 | - | 3774140 - 3774781 | 24376.1 |
| ytxh domain-containing protein | IZT61_15380 | Not Available | + | 3774861 - 3775088 | 7691.15 |
| mbl fold metallo-hydrolase | IZT61_15385 | Q5SLP1 | + | 3775150 - 3776550 | 52679.1 |
| response regulator transcription factor | IZT61_15390 | P54662 | - | 3776557 - 3777198 | 23587.1 |
| hypothetical protein | IZT61_15395 | P54663 | - | 3777201 - 3777992 | 29461.0 |
| hypothetical protein | IZT61_15400 | Not Available | - | 3777959 - 3778612 | 25180.3 |
| hypothetical protein | IZT61_15405 | Not Available | - | 3778619 - 3779002 | 13716.0 |
| response regulator transcription factor | IZT61_15410 | Q7WZY4 | + | 3779292 - 3779522 | 9041.15 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.