Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| beta-ketoacyl-acp synthase ii | IZT61_15315 | O34340 | + | 3763082 - 3764335 | 44492.8 |
| ribonuclease iii | IZT61_15320 | Q5LIS2 | + | 3764431 - 3765159 | 27758.8 |
| hypothetical protein | IZT61_15325 | Not Available | - | 3765350 - 3766060 | 26987.6 |
| hypothetical protein | IZT61_15330 | Q8A1G1 | - | 3766057 - 3766791 | 27944.2 |
| 1-acyl-sn-glycerol-3-phosphate acyltransferase | IZT61_15335 | Q9LLY4 | + | 3766856 - 3767593 | 27810.6 |
| yicc family protein | IZT61_15340 | O34441 | + | 3767880 - 3768743 | 32784.0 |
| guanylate kinase | IZT61_15345 | Q5L9N9 | + | 3768813 - 3769382 | 21943.2 |
| duf2281 domain-containing protein | IZT61_15350 | Not Available | + | 3769417 - 3769620 | 7880.34 |
| nicotinate-nucleotide adenylyltransferase | IZT61_15355 | A5FLZ0 | + | 3770090 - 3770662 | 21847.4 |
| nuclear transport factor 2 family protein | IZT61_15360 | Not Available | - | 3770664 - 3771110 | 16970.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.