Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| epimerase | IZT61_15265 | A3LQJ9 | - | 3751685 - 3752362 | 25548.1 |
| hypothetical protein | IZT61_15270 | Not Available | - | 3752393 - 3753145 | 28187.6 |
| dpp iv n-terminal domain-containing protein | IZT61_15275 | B2RJX3 | - | 3753271 - 3755409 | 79630.5 |
| sulfatase | IZT61_15280 | T2KPJ9 | - | 3755832 - 3757343 | 56300.5 |
| Trna-ser | Not Available | Not Available | + | 3758498 - 3758585 | Not Available |
| paraslipin | IZT61_15290 | O60121 | - | 3758633 - 3759583 | 34913.4 |
| nfed family protein | IZT61_15295 | Q58236 | - | 3759580 - 3760026 | 16821.0 |
| pyruvate kinase | IZT61_15300 | Q55863 | - | 3760668 - 3762098 | 52359.7 |
| ipexxxvdy family protein | IZT61_15305 | Not Available | - | 3762247 - 3762666 | 16303.6 |
| acyl carrier protein | IZT61_15310 | Q11V97 | + | 3762824 - 3763060 | 8460.92 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.