Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ribosome recycling factor | IZT61_15115 | A5FMF6 | - | 3720443 - 3721006 | 20737.0 |
| ump kinase | IZT61_15120 | Q11XK2 | - | 3721365 - 3722069 | 25868.7 |
| n-acetylglucosamine-6-phosphate deacetylase | IZT61_15125 | O32445 | - | 3722130 - 3723233 | 40052.4 |
| metallophosphoesterase | IZT61_15130 | Q9LXI4 | + | 3723331 - 3724527 | 44892.8 |
| hypothetical protein | IZT61_15135 | Not Available | - | 3724583 - 3724768 | 6948.29 |
| hypothetical protein | IZT61_15140 | Not Available | - | 3724808 - 3725350 | 21059.0 |
| elongation factor ts | IZT61_15145 | Q11QN7 | - | 3725986 - 3726831 | 29749.5 |
| 30s ribosomal protein s2 | IZT61_15150 | Q11QN6 | - | 3726942 - 3727775 | 30921.5 |
| 30s ribosomal protein s9 | IZT61_15155 | Q11QN5 | - | 3727794 - 3728180 | 14161.4 |
| 50s ribosomal protein l13 | IZT61_15160 | Q14KZ8 | - | 3728184 - 3728627 | 16376.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.