Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glycine cleavage system protein gcvh | IZT61_15055 | Q11Z42 | + | 3707902 - 3708282 | 13849.2 |
| vanz family protein | IZT61_15060 | Not Available | + | 3708295 - 3708696 | 15623.4 |
| outer membrane beta-barrel protein | IZT61_15065 | Not Available | + | 3709093 - 3711894 | 102181.0 |
| tonb-dependent receptor family protein | IZT61_15070 | Not Available | + | 3712489 - 3715257 | 102341.0 |
| hypothetical protein | IZT61_15075 | Not Available | - | 3715280 - 3715930 | 24235.3 |
| hypothetical protein | IZT61_15080 | Not Available | + | 3716069 - 3716344 | 10409.6 |
| hypothetical protein | IZT61_15085 | Not Available | + | 3716474 - 3716833 | 13156.9 |
| ferrous iron transport protein a | IZT61_15090 | P0AEL5 | + | 3716853 - 3717068 | 7797.82 |
| ferrous iron transport protein b | IZT61_15095 | Q5XPH7 | + | 3717073 - 3719187 | 78132.4 |
| lrp/asnc ligand binding domain-containing protein | IZT61_15100 | P44337 | - | 3719273 - 3719749 | 17898.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.