Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| sigma-54-dependent fis family transcriptional regulator | IZT61_14955 | P14375 | - | 3677774 - 3679105 | 49069.5 |
| hypothetical protein | IZT61_14960 | Not Available | - | 3679174 - 3679488 | 11203.4 |
| hypothetical protein | IZT61_14965 | Not Available | - | 3679599 - 3679913 | 11353.6 |
| amidohydrolase family protein | IZT61_14970 | O25046 | + | 3680517 - 3681683 | 43512.8 |
| abi family protein | IZT61_14975 | Not Available | + | 3681823 - 3682728 | 35562.3 |
| duf561 domain-containing protein | IZT61_14980 | Q9I4V0 | + | 3682719 - 3683675 | 34145.6 |
| acylphosphatase | IZT61_14985 | O29440 | + | 3683720 - 3684004 | 10614.8 |
| oligosaccharide flippase family protein | IZT61_14990 | Q58467 | + | 3684166 - 3685620 | 55854.6 |
| dutp diphosphatase | IZT61_14995 | B2RJH1 | + | 3685678 - 3686109 | 15717.9 |
| tetratricopeptide repeat protein | IZT61_15000 | Q7Z4L5 | + | 3686247 - 3687938 | 63310.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.