Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 23s ribosomal rna | Not Available | Not Available | + | 3664767 - 3667643 | Not Available |
| 5s ribosomal rna | Not Available | Not Available | + | 3667783 - 3667894 | Not Available |
| protein kinase | IZT61_14915 | Q54L00 | + | 3668849 - 3670147 | 48050.3 |
| 23s rrna (adenine(2503)-c(2))-methyltransferase rlmn | IZT61_14920 | Q11QF0 | - | 3670137 - 3671198 | 39790.6 |
| dmt family transporter | IZT61_14925 | Not Available | - | 3671200 - 3671478 | 9896.14 |
| hypothetical protein | IZT61_14930 | Not Available | - | 3671454 - 3671702 | 9228.24 |
| 23s rrna pseudouridine(2604) synthase rluf | IZT61_14935 | P32684 | - | 3671998 - 3672969 | 35993.2 |
| dinb family protein | IZT61_14940 | Not Available | - | 3673323 - 3673820 | 18781.2 |
| yafy family transcriptional regulator | IZT61_14945 | O34920 | - | 3674073 - 3674762 | 26736.4 |
| response regulator | IZT61_14950 | Q9KLK7 | + | 3675294 - 3677762 | 92877.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.