Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase | IZT61_14855 | Q48460 | + | 3652072 - 3653478 | 54267.8 |
| 1-deoxy-d-xylulose-5-phosphate synthase | IZT61_14860 | Q11NY7 | - | 3654157 - 3656085 | 70443.9 |
| hypothetical protein | IZT61_14865 | Not Available | + | 3656401 - 3656592 | 7335.92 |
| segregation/condensation protein a | IZT61_14870 | B2V486 | + | 3656712 - 3657455 | 28890.8 |
| serine hydroxymethyltransferase | IZT61_14875 | Q11NZ7 | + | 3657843 - 3659114 | 45807.4 |
| hypothetical protein | IZT61_14880 | Not Available | - | 3659395 - 3660804 | 51722.7 |
| comf family protein | IZT61_14885 | Q8X715 | - | 3660815 - 3661513 | 25733.7 |
| 16s ribosomal rna | Not Available | Not Available | + | 3662362 - 3663883 | Not Available |
| Trna-ile | Not Available | Not Available | + | 3664118 - 3664192 | Not Available |
| Trna-ala | Not Available | Not Available | + | 3664281 - 3664357 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.