Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| duf288 domain-containing protein | IZT61_14805 | Q9SCN0 | + | 3640036 - 3641028 | 38327.5 |
| glycosyltransferase family 4 protein | IZT61_14810 | Q59002 | + | 3641033 - 3642094 | 39917.3 |
| glycosyltransferase | IZT61_14815 | Q9HTC0 | + | 3642094 - 3643215 | 42481.7 |
| nad-dependent epimerase/dehydratase family protein | IZT61_14820 | Q56623 | + | 3643561 - 3644448 | 33208.0 |
| glycosyltransferase family 4 protein | IZT61_14825 | O34753 | + | 3644716 - 3645693 | 37203.6 |
| transferase | IZT61_14830 | P71063 | + | 3645686 - 3646234 | 18974.7 |
| polysaccharide biosynthesis protein | IZT61_14835 | P39853 | + | 3646279 - 3648213 | 72604.8 |
| gliding motility protein remb | IZT61_14840 | Not Available | + | 3648241 - 3649857 | 62072.9 |
| hypothetical protein | IZT61_14845 | P54663 | - | 3650149 - 3650907 | 28802.9 |
| response regulator transcription factor | IZT61_14850 | O32197 | + | 3651296 - 3651943 | 24330.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.