Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| wxcm-like domain-containing protein | IZT61_14755 | Q6T1W8 | + | 3629984 - 3630397 | 15398.5 |
| n-acetyltransferase | IZT61_14760 | Q6T1W7 | + | 3630387 - 3630938 | 19966.1 |
| degt/dnrj/eryc1/strs family aminotransferase | IZT61_14765 | Q6T1W6 | + | 3630935 - 3632038 | 41140.6 |
| o-antigen translocase | IZT61_14770 | P0AAA7 | + | 3632046 - 3633302 | 46771.3 |
| hypothetical protein | IZT61_14775 | Not Available | + | 3633295 - 3634488 | 45403.6 |
| udp-n-acetylglucosamine 2-epimerase (non-hydrolyzing) | IZT61_14780 | P58600 | + | 3634473 - 3635588 | 41469.0 |
| hypothetical protein | IZT61_14785 | Not Available | + | 3635581 - 3636660 | 41299.6 |
| glycosyltransferase | IZT61_14790 | D4GU63 | + | 3636672 - 3637676 | 38290.1 |
| o-antigen ligase family protein | IZT61_14795 | Not Available | + | 3637673 - 3639067 | 53130.1 |
| glycosyltransferase family 1 protein | IZT61_14800 | Not Available | + | 3639078 - 3640061 | 38777.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.