Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| shikimate dehydrogenase | IZT61_14705 | Q2NGK8 | - | 3617982 - 3618725 | 27585.1 |
| phosphosulfolactate synthase | IZT61_14710 | O27710 | - | 3618814 - 3619581 | 28742.5 |
| tetratricopeptide repeat protein | IZT61_14715 | Not Available | - | 3619642 - 3621045 | 54714.9 |
| nuclear transport factor 2 family protein | IZT61_14720 | Not Available | + | 3621292 - 3621747 | 16942.5 |
| nucleotide sugar dehydrogenase | IZT61_14725 | Q04972 | + | 3622063 - 3623346 | 47032.8 |
| hypothetical protein | IZT61_14730 | Not Available | - | 3623771 - 3624442 | 25032.6 |
| gdp-mannose 4,6-dehydratase | IZT61_14735 | Q06952 | + | 3624694 - 3625830 | 42915.6 |
| slbb domain-containing protein | IZT61_14740 | P42213 | + | 3625850 - 3628321 | 90306.9 |
| lipopolysaccharide biosynthesis protein | IZT61_14745 | Not Available | + | 3628502 - 3629584 | 40319.4 |
| wxcm-like domain-containing protein | IZT61_14750 | Q6T1W8 | + | 3629584 - 3630000 | 16096.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.