Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ompa family protein | IZT61_14605 | P37726 | - | 3596765 - 3597442 | 22990.5 |
| abc transporter atp-binding protein | IZT61_14610 | C0SPB4 | - | 3597617 - 3598309 | 25953.1 |
| hypothetical protein | IZT61_14615 | Not Available | - | 3598312 - 3599784 | 56255.5 |
| replication-associated recombination protein a | IZT61_14620 | P39918 | - | 3600029 - 3601309 | 47013.7 |
| class i sam-dependent methyltransferase | IZT61_14625 | Q55EX9 | + | 3601624 - 3602355 | 28150.4 |
| histidine--trna ligase | IZT61_14630 | A6KXA6 | - | 3602518 - 3603909 | 51471.3 |
| class ii fumarate hydratase | IZT61_14635 | Q9CMK1 | + | 3604709 - 3606106 | 49700.8 |
| fumarate hydratase | IZT61_14640 | Not Available | + | 3606813 - 3607367 | 21153.6 |
| s1/p1 nuclease | IZT61_14645 | Q9C9G4 | + | 3607369 - 3608175 | 30575.8 |
| hypothetical protein | IZT61_14650 | Not Available | + | 3608680 - 3609114 | 15696.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.