Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| had-ib family phosphatase | IZT61_14555 | O82796 | + | 3584483 - 3585784 | 49254.4 |
| voltage-gated chloride channel family protein | IZT61_14560 | Q87WD2 | - | 3586039 - 3587328 | 46150.7 |
| tryptophan 2,3-dioxygenase | IZT61_14565 | Q1GEF8 | + | 3587474 - 3588439 | 37411.8 |
| branched-chain amino acid aminotransferase | IZT61_14570 | P39576 | + | 3588587 - 3589651 | 39331.6 |
| duf4920 domain-containing protein | IZT61_14575 | Not Available | - | 3589856 - 3590320 | 17091.0 |
| dna repair protein rada | IZT61_14580 | P37572 | - | 3591858 - 3593234 | 50197.6 |
| hypothetical protein | IZT61_14585 | Not Available | - | 3593336 - 3594232 | 32761.7 |
| zinc-dependent peptidase | IZT61_14590 | P73079 | - | 3594272 - 3595045 | 29535.5 |
| gfo/idh/moca family oxidoreductase | IZT61_14595 | O32223 | - | 3595144 - 3596169 | 37874.2 |
| hypothetical protein | IZT61_14600 | Not Available | + | 3596303 - 3596647 | 13514.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.