Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dctp deaminase | IZT61_14505 | B2TNM9 | + | 3569013 - 3569549 | 19959.0 |
| hypothetical protein | IZT61_14510 | Not Available | + | 3569592 - 3572351 | 101977.0 |
| duf1399 domain-containing protein | IZT61_14515 | Not Available | + | 3572965 - 3574305 | 50774.3 |
| tonb-dependent receptor plug domain-containing protein | IZT61_14520 | T2KM18 | + | 3574682 - 3577138 | 90202.2 |
| enoyl-coa hydratase/isomerase family protein | IZT61_14525 | P42125 | + | 3577544 - 3578305 | 27884.8 |
| sdr family oxidoreductase | IZT61_14530 | Q16698 | + | 3578379 - 3579260 | 31499.2 |
| phosphoribosylamine--glycine ligase | IZT61_14535 | P57829 | + | 3579469 - 3580740 | 45339.3 |
| ahpc/tsa family protein | IZT61_14540 | Q73B22 | - | 3580901 - 3582055 | 41437.7 |
| formimidoylglutamase | IZT61_14545 | Q4L8J3 | - | 3582268 - 3583449 | 44823.8 |
| nad-dependent epimerase/dehydratase family protein | IZT61_14550 | P73212 | + | 3583521 - 3584483 | 35179.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.