Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| duf4350 domain-containing protein | IZT61_14455 | Not Available | - | 3560639 - 3561829 | 45415.9 |
| duf4129 domain-containing protein | IZT61_14460 | Not Available | - | 3561826 - 3562551 | 28214.2 |
| hypothetical protein | IZT61_14465 | Not Available | - | 3562553 - 3563437 | 33908.2 |
| stage ii sporulation protein m | IZT61_14470 | Not Available | - | 3563439 - 3564386 | 35808.1 |
| rdd family protein | IZT61_14475 | P42401 | + | 3565032 - 3565772 | 27467.0 |
| duf2752 domain-containing protein | IZT61_14480 | Not Available | - | 3565774 - 3566169 | 15110.0 |
| cd225/dispanin family protein | IZT61_14485 | A0A1B0GWB2 | - | 3566169 - 3566498 | 11555.1 |
| sgnh/gdsl hydrolase family protein | IZT61_14490 | Not Available | - | 3566654 - 3567376 | 25951.8 |
| lipoyl(octanoyl) transferase lipb | IZT61_14495 | A0M5H7 | - | 3567560 - 3568282 | 27313.4 |
| 4'-phosphopantetheinyl transferase superfamily protein | IZT61_14500 | P43954 | - | 3568294 - 3568941 | 24610.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.