Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| tigr01777 family protein | IZT61_14405 | P73467 | - | 3546921 - 3547838 | 33799.9 |
| duf393 domain-containing protein | IZT61_14410 | Not Available | - | 3547844 - 3548659 | 31088.1 |
| transcriptional regulator | IZT61_14415 | Q58958 | - | 3548847 - 3549353 | 19296.4 |
| alginate lyase family protein | IZT61_14420 | Not Available | - | 3549417 - 3550514 | 41697.5 |
| hypothetical protein | IZT61_14425 | Not Available | + | 3550628 - 3553126 | 92838.5 |
| udp-2,3-diacylglucosamine diphosphatase | IZT61_14430 | B5FF31 | + | 3554077 - 3554931 | 32821.6 |
| glycosyl transferase | IZT61_14435 | Not Available | + | 3554954 - 3555943 | 37681.8 |
| nucleoid-associated protein | IZT61_14440 | Not Available | + | 3556590 - 3557648 | 41579.8 |
| duf58 domain-containing protein | IZT61_14445 | P94475 | - | 3558033 - 3559379 | 51379.2 |
| moxr family atpase | IZT61_14450 | P94474 | - | 3559681 - 3560658 | 36198.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.