Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ai-2e family transporter | IZT61_14355 | P9WFM2 | + | 3537971 - 3539020 | 39185.5 |
| ytxh domain-containing protein | IZT61_14360 | Not Available | + | 3539099 - 3539365 | 9356.03 |
| phage holin family protein | IZT61_14365 | Not Available | + | 3539418 - 3539798 | 14181.2 |
| hypothetical protein | IZT61_14370 | Not Available | + | 3539785 - 3540222 | 16333.0 |
| aspartate--trna ligase | IZT61_14375 | Q7MXM0 | - | 3540541 - 3542286 | 66109.0 |
| type ii toxin-antitoxin system higb family toxin | IZT61_14380 | Q8FEM8 | + | 3542420 - 3542755 | 13268.0 |
| helix-turn-helix domain-containing protein | IZT61_14385 | P67702 | + | 3542752 - 3543108 | 13471.4 |
| hypothetical protein | IZT61_14390 | Not Available | - | 3543115 - 3543519 | 15665.7 |
| translational gtpase typa | IZT61_14395 | O07631 | + | 3544305 - 3546110 | 67184.4 |
| hypothetical protein | IZT61_14400 | Not Available | - | 3546551 - 3546709 | 5702.65 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.