Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IZT61_14305 | Not Available | - | 3528627 - 3529049 | 15951.5 |
| duf3419 family protein | IZT61_14310 | Not Available | - | 3529036 - 3529713 | 26204.8 |
| iron-containing redox enzyme family protein | IZT61_14315 | Not Available | - | 3529720 - 3530460 | 29045.2 |
| hypothetical protein | IZT61_14320 | Not Available | - | 3530468 - 3531079 | 23797.5 |
| helix-turn-helix transcriptional regulator | IZT61_14325 | Not Available | + | 3531276 - 3531488 | 8269.21 |
| carboxypeptidase-like regulatory domain-containing protein | IZT61_14330 | Not Available | - | 3531852 - 3532433 | 21499.9 |
| glutamine--trna ligase/yqey domain fusion protein | IZT61_14335 | Q0SVB1 | - | 3532617 - 3534272 | 63416.0 |
| cobalamin b12-binding domain-containing protein | IZT61_14340 | I3VE74 | + | 3535132 - 3535551 | 15118.6 |
| enoyl-coa hydratase/isomerase family protein | IZT61_14345 | A4YI89 | + | 3535556 - 3536332 | 27438.2 |
| sigma-54-dependent fis family transcriptional regulator | IZT61_14350 | P14375 | + | 3536493 - 3537908 | 53018.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.