Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glucuronate isomerase | IZT61_14205 | Q8A9J2 | - | 3501167 - 3502567 | 53704.3 |
| altronate dehydratase | IZT61_14210 | O34673 | - | 3503063 - 3504709 | 59497.9 |
| tagaturonate reductase | IZT61_14215 | A6L4U5 | - | 3504711 - 3506222 | 56734.0 |
| pectate lyase | IZT61_14220 | Not Available | - | 3506234 - 3507250 | 38066.6 |
| glycoside hydrolase family 88 protein | IZT61_14225 | O34559 | - | 3507617 - 3509542 | 71588.7 |
| glycoside hydrolase family 28 protein | IZT61_14230 | A7PZL3 | - | 3509548 - 3511221 | 60416.6 |
| pectin esterase | IZT61_14235 | Q9LVQ0 | - | 3511378 - 3512337 | 35875.3 |
| glycoside hydrolase 43 family protein | IZT61_14240 | Q9WXE8 | + | 3512920 - 3514551 | 60416.5 |
| rhamnogalacturonan acetylesterase | IZT61_14245 | O31528 | + | 3514575 - 3515366 | 30098.4 |
| carboxymuconolactone decarboxylase family protein | IZT61_14250 | P96684 | - | 3515427 - 3515861 | 16180.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.