Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| type ii toxin-antitoxin system rele/pare family toxin | IZT61_14105 | Not Available | - | 3475112 - 3475534 | 16384.9 |
| hypothetical protein | IZT61_14110 | Not Available | - | 3475531 - 3475767 | 9356.07 |
| sigma-70 family rna polymerase sigma factor | IZT61_14115 | O07582 | + | 3475973 - 3476482 | 19923.9 |
| hypothetical protein | IZT61_14120 | Not Available | + | 3476529 - 3477020 | 18541.6 |
| hypothetical protein | IZT61_14125 | Not Available | + | 3477246 - 3478508 | 45343.8 |
| tlpa family protein disulfide reductase | IZT61_14130 | P35160 | + | 3478730 - 3479281 | 20993.4 |
| hypothetical protein | IZT61_14135 | Q8XAZ3 | - | 3479579 - 3480469 | 33904.3 |
| mhs family mfs transporter | IZT61_14140 | P0DPR5 | + | 3480606 - 3482129 | 55792.9 |
| hypothetical protein | IZT61_14145 | Not Available | + | 3482134 - 3482385 | 9552.04 |
| class i sam-dependent rrna methyltransferase | IZT61_14150 | A4SML8 | - | 3483154 - 3484338 | 43950.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.