Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ycei family protein | IZT61_14055 | Q5HKN0 | - | 3465435 - 3465971 | 19442.6 |
| crp/fnr family transcriptional regulator | IZT61_14060 | P46148 | - | 3466283 - 3466873 | 22792.8 |
| feob-associated cys-rich membrane protein | IZT61_14065 | Not Available | - | 3466885 - 3467040 | 5555.92 |
| hypothetical protein | IZT61_14070 | Not Available | - | 3467539 - 3468726 | 45680.9 |
| gmp synthase | IZT61_14075 | Not Available | - | 3469357 - 3470184 | 31353.1 |
| carboxylate-amine ligase | IZT61_14080 | Q01ZM2 | - | 3470191 - 3471291 | 42212.5 |
| hypothetical protein | IZT61_14085 | Not Available | - | 3471317 - 3472378 | 39853.7 |
| esterase family protein | IZT61_14090 | Not Available | - | 3472553 - 3473260 | 27454.6 |
| esterase family protein | IZT61_14095 | Not Available | + | 3473425 - 3474237 | 30485.7 |
| tigr02117 family protein | IZT61_14100 | Not Available | - | 3474394 - 3475071 | 25326.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.