Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| deda family protein | IZT61_14005 | P0ABP7 | + | 3455294 - 3455950 | 24897.8 |
| inorganic diphosphatase | IZT61_14010 | Q72MG4 | + | 3455953 - 3456504 | 20854.2 |
| hlyc/corc family transporter | IZT61_14015 | P54428 | + | 3456618 - 3457928 | 48435.5 |
| 16s rrna (uracil(1498)-n(3))-methyltransferase | IZT61_14020 | P37995 | + | 3458101 - 3458805 | 26597.9 |
| duf4159 domain-containing protein | IZT61_14025 | Not Available | + | 3458893 - 3459558 | 25140.0 |
| biotin/lipoyl-binding protein | IZT61_14030 | Q57111 | + | 3459560 - 3460060 | 18581.6 |
| sumf1/egtb/pvdo family nonheme iron enzyme | IZT61_14035 | Q8NBK3 | - | 3460122 - 3461807 | 62426.9 |
| type ix secretion system outer membrane channel protein porv | IZT61_14040 | Not Available | + | 3462477 - 3463664 | 42339.9 |
| 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase | IZT61_14045 | Q11Q93 | + | 3463703 - 3464182 | 17342.1 |
| pirin family protein | IZT61_14050 | Q9I163 | - | 3464487 - 3465362 | 32182.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.