Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| nadh-quinone oxidoreductase subunit m | IZT61_13955 | Q92G96 | + | 3443690 - 3445171 | 53885.6 |
| nadh-quinone oxidoreductase subunit n | IZT61_13960 | Q11VC5 | + | 3445175 - 3446548 | 49710.3 |
| response regulator transcription factor | IZT61_13965 | Q82Z76 | - | 3446583 - 3447272 | 26509.2 |
| tonb-dependent receptor | IZT61_13970 | Not Available | + | 3447860 - 3450124 | 85715.6 |
| hypothetical protein | IZT61_13975 | Not Available | + | 3450147 - 3450332 | 6701.71 |
| bacteriocin | IZT61_13980 | Not Available | + | 3450582 - 3450755 | 6568.75 |
| hypothetical protein | IZT61_13985 | Not Available | + | 3450784 - 3450963 | 6535.58 |
| cpbp family intramembrane metalloprotease | IZT61_13990 | Not Available | + | 3451297 - 3451806 | 19596.3 |
| hlyd family efflux transporter periplasmic adaptor subunit | IZT61_13995 | P55125 | + | 3451865 - 3453004 | 43208.7 |
| peptidase domain-containing abc transporter | IZT61_14000 | P59852 | + | 3453061 - 3455208 | 79806.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.