Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| translation initiation factor | IZT61_13855 | P0A2G8 | + | 3424478 - 3424828 | 12679.5 |
| phosphoenolpyruvate carboxykinase (atp) | IZT61_13860 | A5FK68 | + | 3425302 - 3426897 | 58789.2 |
| mota/tolq/exbb proton channel family protein | IZT61_13865 | P50598 | + | 3427197 - 3428027 | 29049.5 |
| biopolymer transporter exbd | IZT61_13870 | Not Available | + | 3428103 - 3428717 | 22570.6 |
| biopolymer transporter exbd | IZT61_13875 | Not Available | + | 3428721 - 3429227 | 18458.6 |
| tonb family protein | IZT61_13880 | Not Available | + | 3429245 - 3430069 | 30379.6 |
| substrate-binding domain-containing protein | IZT61_13885 | P39665 | + | 3430312 - 3431208 | 33501.9 |
| tetratricopeptide repeat protein | IZT61_13890 | Not Available | + | 3431290 - 3432999 | 63822.6 |
| nadh-quinone oxidoreductase subunit a | IZT61_13895 | A6H1R4 | + | 3433092 - 3433463 | 14023.7 |
| nadh-quinone oxidoreductase subunit b | IZT61_13900 | A6H1R3 | + | 3433735 - 3434277 | 19691.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.