Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| duf1016 family protein | IZT61_13805 | P45423 | + | 3411171 - 3412262 | 42072.7 |
| glycosyltransferase | IZT61_13810 | P0A5A0 | + | 3412264 - 3413010 | 29002.6 |
| duf4981 domain-containing protein | IZT61_13815 | O52847 | + | 3413154 - 3416330 | 118886.0 |
| pas domain s-box protein | IZT61_13820 | Q9RDT3 | - | 3416693 - 3419164 | 93783.5 |
| dmt family transporter | IZT61_13825 | E1W9W8 | - | 3419429 - 3420280 | 29912.1 |
| hypothetical protein | IZT61_13830 | Not Available | - | 3420385 - 3420732 | 13132.5 |
| superoxide dismutase family protein | IZT61_13835 | Q90023 | + | 3420852 - 3421382 | 18740.0 |
| biopolymer transporter exbd | IZT61_13840 | Not Available | + | 3421477 - 3422007 | 19335.4 |
| methionine adenosyltransferase | IZT61_13845 | A5FJU1 | - | 3422091 - 3423341 | 46065.7 |
| diacylglycerol kinase family lipid kinase | IZT61_13850 | Q87IB3 | + | 3423546 - 3424448 | 33105.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.