Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| duf4834 family protein | IZT61_13705 | Not Available | - | 3388284 - 3388538 | 9654.08 |
| ywbe family protein | IZT61_13710 | P39588 | - | 3388656 - 3388853 | 7227.73 |
| duf3472 domain-containing protein | IZT61_13715 | Not Available | - | 3389000 - 3390301 | 48415.2 |
| excinuclease abc subunit uvrb | IZT61_13720 | Q11Z64 | - | 3390671 - 3392719 | 78025.4 |
| atp-binding protein | IZT61_13725 | P9WLM8 | + | 3393108 - 3394265 | 44617.5 |
| m1 family metallopeptidase | IZT61_13730 | P55786 | - | 3394480 - 3396852 | 89662.6 |
| hupe/urej family protein | IZT61_13735 | Not Available | - | 3396869 - 3397447 | 21912.6 |
| hypothetical protein | IZT61_13740 | Not Available | + | 3397552 - 3398058 | 19110.3 |
| hypothetical protein | IZT61_13745 | Not Available | + | 3398432 - 3399697 | 47921.4 |
| uracil phosphoribosyltransferase | IZT61_13750 | B2RIV3 | + | 3399777 - 3400421 | 23660.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.