Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dmt family transporter | IZT61_13655 | T2KPJ3 | + | 3369899 - 3373011 | 112215.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | IZT61_13660 | Not Available | + | 3373023 - 3374654 | 58657.1 |
| duf1735 domain-containing protein | IZT61_13665 | Not Available | + | 3374667 - 3375527 | 31226.1 |
| susc/raga family tonb-linked outer membrane protein | IZT61_13670 | T2KM18 | + | 3376203 - 3379316 | 112496.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | IZT61_13675 | Not Available | + | 3379328 - 3380959 | 58519.8 |
| duf1735 domain-containing protein | IZT61_13680 | Not Available | + | 3380967 - 3381899 | 32651.6 |
| hypothetical protein | IZT61_13685 | Not Available | + | 3381997 - 3382695 | 26266.4 |
| susc/raga family tonb-linked outer membrane protein | IZT61_13690 | T2KPJ3 | + | 3382949 - 3386161 | 116189.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | IZT61_13695 | Not Available | + | 3386173 - 3387648 | 53134.7 |
| hypothetical protein | IZT61_13700 | Not Available | + | 3387863 - 3388054 | 6779.19 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.