Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| o-methyltransferase | IZT61_13605 | Q00719 | - | 3354021 - 3354656 | 24191.3 |
| holliday junction resolvase ruvx | IZT61_13610 | Q11X87 | - | 3354665 - 3355081 | 15603.0 |
| tonb-dependent receptor | IZT61_13615 | Not Available | - | 3355136 - 3357538 | 88594.7 |
| hypothetical protein | IZT61_13620 | P75177 | + | 3357719 - 3358867 | 43100.1 |
| hypothetical protein | IZT61_13625 | P37541 | + | 3358870 - 3360363 | 55623.9 |
| gliding motility lipoprotein gldh | IZT61_13630 | A0M6E0 | + | 3360332 - 3360823 | 18696.3 |
| response regulator | IZT61_13635 | Q87GU5 | + | 3361401 - 3363512 | 80416.3 |
| response regulator | IZT61_13640 | Q87GU5 | + | 3363728 - 3365803 | 79359.1 |
| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase | IZT61_13645 | P96613 | - | 3365809 - 3367110 | 47786.6 |
| zinc carboxypeptidase | IZT61_13650 | Not Available | + | 3367199 - 3369694 | 93339.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.