Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| insulinase family protein | IZT61_13505 | Q04805 | - | 3332114 - 3333346 | 46424.5 |
| hypothetical protein | IZT61_13510 | Not Available | - | 3333373 - 3333825 | 16650.4 |
| helix-turn-helix transcriptional regulator | IZT61_13515 | P23873 | - | 3333826 - 3334131 | 11503.9 |
| type ii toxin-antitoxin system rele/pare family toxin | IZT61_13520 | Not Available | - | 3334112 - 3334453 | 13376.2 |
| s9 family peptidase | IZT61_13525 | O07834 | - | 3334694 - 3336847 | 81613.4 |
| glutamate 5-kinase | IZT61_13530 | Q8KCG4 | + | 3337125 - 3338204 | 39237.9 |
| glutamate-5-semialdehyde dehydrogenase | IZT61_13535 | Q8A1E8 | + | 3338380 - 3339663 | 46658.7 |
| mbl fold metallo-hydrolase | IZT61_13540 | Q5SLP1 | - | 3339751 - 3341133 | 51744.3 |
| hypothetical protein | IZT61_13545 | Not Available | - | 3341217 - 3341564 | 13329.9 |
| hypothetical protein | IZT61_13550 | Not Available | + | 3341654 - 3341908 | 9822.14 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.