Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| phosphatidylserine decarboxylase family protein | IZT61_13455 | Q11Y69 | - | 3321083 - 3321742 | 24766.1 |
| hypothetical protein | IZT61_13460 | Not Available | + | 3321922 - 3322218 | 11085.5 |
| glpgli family protein | IZT61_13465 | Not Available | + | 3322454 - 3323260 | 30213.6 |
| carboxypeptidase regulatory-like domain-containing protein | IZT61_13470 | Not Available | + | 3323260 - 3325884 | 99696.7 |
| hypoxanthine phosphoribosyltransferase | IZT61_13475 | P37472 | - | 3325881 - 3326420 | 20103.4 |
| transglycosylase domain-containing protein | IZT61_13480 | O24849 | - | 3326582 - 3328723 | 79803.4 |
| mrp/nbp35 family atp-binding protein | IZT61_13485 | P53383 | + | 3328986 - 3330062 | 38204.2 |
| nifu family protein | IZT61_13490 | O32119 | + | 3330097 - 3330342 | 8692.58 |
| hypothetical protein | IZT61_13495 | Not Available | + | 3330395 - 3331033 | 24205.3 |
| peptide deformylase | IZT61_13500 | A0M3P3 | - | 3331405 - 3331965 | 21298.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.