Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 6-phosphofructokinase | IZT61_13405 | Q8A624 | + | 3313249 - 3314232 | 35255.4 |
| heavy metal-binding domain-containing protein | IZT61_13410 | A6L2T0 | - | 3314492 - 3314815 | 11243.5 |
| 5'(3')-deoxyribonucleotidase | IZT61_13415 | P66840 | - | 3314911 - 3315411 | 19700.6 |
| 30s ribosomal protein s16 | IZT61_13420 | A5FKD9 | + | 3315576 - 3316136 | 19941.4 |
| 16s rrna processing protein rimm | IZT61_13425 | A6GWI5 | + | 3316306 - 3316833 | 20425.3 |
| hypothetical protein | IZT61_13430 | Not Available | + | 3316939 - 3317373 | 15937.2 |
| hypothetical protein | IZT61_13435 | Not Available | + | 3317428 - 3318036 | 23025.4 |
| trna (guanosine(37)-n1)-methyltransferase trmd | IZT61_13440 | A5FHV7 | + | 3318103 - 3318777 | 25042.1 |
| 50s ribosomal protein l19 | IZT61_13445 | A6LEF2 | + | 3318915 - 3319262 | 13021.8 |
| mechanosensitive ion channel family protein | IZT61_13450 | Q57634 | + | 3319333 - 3320508 | 44028.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.