Pedobacter endophyticus JBR3-12

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter endophyticus
StrainJBR3-12

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter endophyticus JBR3-12

Accession NumberCP064939.1

Gene Summary

Adenine Count

1588031 bp

Thymine Count

1595629 bp

Guanine Count

1118331 bp

Cytosine Count

1124079 bp

Genome Length

5426070 bp

Protein-coding Genes

4366 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinIZT61_13255Not Available+3277905 - 327853122907.9
peptidaseIZT61_13260Not Available-3278599 - 328127198709.6
5-methyltetrahydropteroyltriglutamate-- homocysteine s-methyltransferaseIZT61_13265A5FJR8+3281847 - 328418089165.7
acyl-coa thioesteraseIZT61_13270P49851+3284291 - 328467714402.5
class i sam-dependent methyltransferaseIZT61_13275O05400+3284725 - 328539024705.7
phosphatidate cytidylyltransferaseIZT61_13280Q5HGH0-3285539 - 328634530356.7
duf2007 domain-containing proteinIZT61_13285Not Available-3286381 - 32865877608.03
cpbp family intramembrane metalloproteaseIZT61_13290Not Available-3286568 - 328749434834.5
trna dihydrouridine synthase dusbIZT61_13295Q4UNJ4+3287539 - 328854637870.7
co2+/mg2+ efflux protein apagIZT61_13300B4UHA8+3288582 - 328896814587.4

Displaying genes 2651 – 2660 of 4428 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites