Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter endophyticus |
| Strain | JBR3-12 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter endophyticus JBR3-12
Accession NumberCP064939.1
Gene Summary
Adenine Count
1588031 bp
Thymine Count
1595629 bp
Guanine Count
1118331 bp
Cytosine Count
1124079 bp
Genome Length
5426070 bp
Protein-coding Genes
4366 genes
Non-Coding Genes
62 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| l-aspartate oxidase | IZT61_13205 | Q9KPA4 | - | 3265655 - 3267241 | 59614.1 |
| quinolinate synthase nada | IZT61_13210 | B2IYC1 | + | 3267689 - 3268687 | 37067.9 |
| dicarboxylate/amino acid:cation symporter | IZT61_13215 | O07605 | + | 3268782 - 3270011 | 43728.8 |
| thiamine-phosphate kinase | IZT61_13220 | O05514 | + | 3270234 - 3271274 | 38178.6 |
| hypothetical protein | IZT61_13225 | Not Available | - | 3271831 - 3272190 | 13695.5 |
| giy-yig nuclease family protein | IZT61_13230 | Q18E71 | - | 3272234 - 3272533 | 12084.3 |
| dna recombination protein rmuc | IZT61_13235 | Q9I4U3 | - | 3273178 - 3274548 | 51851.2 |
| formyltetrahydrofolate deformylase | IZT61_13240 | Q03432 | + | 3274831 - 3275670 | 31532.2 |
| zinc metallopeptidase | IZT61_13245 | O05248 | + | 3276218 - 3276913 | 25498.1 |
| dsba family oxidoreductase | IZT61_13250 | P39598 | - | 3276987 - 3277703 | 27079.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.